FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465708
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46030.9883875733292106No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18910.4060484251934689No Hit
GACGGCTTCCTGGAAAACGCACACGAGCACC14740.31650733936286257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11580.24865366281017293No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT10240.21988026832263993No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9970.2140826440602266No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT9700.20828501979781325No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8450.1814441667310847No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8410.1805852594329494No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7940.17049309867985948No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7810.1677016499609197No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6710.14408169926219863No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6460.13871352864885295No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5900.12668882647495855No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5610.12046174856347755No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5580.11981756808987606No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5300.11380521700292887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)