FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469375
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21110.44974700399467377No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18720.39882822902796267No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18430.3926498002663116No Hit
ACGCTGATCTACGTTCACGATTTTATGGCGGTCATCGCCGTTCA13400.2854860186418109No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10460.222849533954727No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT10160.21645805592543274No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA9400.20026631158455394No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8420.17938748335552598No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8330.17747003994673768No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7900.16830892143808257No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7840.1670306258322237No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6640.1414647137150466No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6170.1314513981358189No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5350.11398135818908121No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5280.11249001331557923No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4930.10503328894806924No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4800.10226364846870838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)