FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469375
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46530.991318242343542No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18850.40159786950732357No Hit
GACGGCTTCCTGGAAAACGCACACGAGCACC14230.3031691078561917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11570.24649800266311586No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10620.2262583222370173No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT10220.2177363515312916No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT10160.21645805592543274No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9270.1974966711051931No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8550.1821571238348868No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8260.17597869507323569No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8080.17214380825565911No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6730.14338215712383487No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6400.13635153129161118No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.1244207723035952No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5770.12292942743009322No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5750.12250332889480692No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5030.10716378162450067No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4810.10247669773635153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)