FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448713
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19640.43769625573584897No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17880.39847296601613946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17800.3966900892106982No Hit
ACGCTGATCTACGTTCACGATTTTATGGCGGTCATCGCCGTTCA13270.29573469010258224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10450.23288828271077502No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT9620.21439093585432115No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8080.18007055734957533No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7620.16981901571828764No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7610.16959615611760748No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7510.1673675601108058No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6830.1522131072645544No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6430.14329872323734769No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6280.1399558292271452No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5280.11766986915912843No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5020.11187551954144409No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4920.10964692353464241No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4710.10496687192035889No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4640.10340685471559771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)