FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448713
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45191.007102535473677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43360.9663192285492064No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17830.3973586680127386No Hit
GACGGCTTCCTGGAAAACGCACACGAGCACC13820.30799196813999147No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10750.23957407073118006No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT9500.2117166206461591No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT8870.19767646580330858No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8480.18898494137678204No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7860.17516764613461167No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7720.1720476117250893No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6950.15488742247271642No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6550.1459730384455097No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6530.14552731924414938No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5690.1268071127870153No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5610.12502423598157397No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5500.12257278037409212No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4820.10741832752784074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)