FastQCFastQC Report
Mon 6 May 2024
EGAF00007926240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494734859
Total Bases74.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC79485401.6066262272414484Illumina Single End Sequencing Primer (100% over 31bp)
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16694090.3374350866187903No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12716290.257032423906883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)