FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495843
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54541.0999449422498653No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16770.3382118936840895No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9980.20127338693901095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9690.19542476146683527No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.18695433836920156No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8350.1684000782505753No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7740.1560977970849644No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7710.15549276686370486No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7700.15529109012328499No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5850.11798089314561262No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5390.1087037630862995No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5130.10346016783538338No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4980.10043501672908561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)