FastQCFastQC Report
Wed 31 May 2023
EGAF00007926244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474438
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50221.058515548923147No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43060.907600150072296No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15760.3321824980292472No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9550.20129079036670755No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8300.1749438282768244No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8140.17157141712931934No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7410.15618479126882753No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7390.1557632398753894No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7300.15386625860491782No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5510.11613740889220509No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5150.10854948381031873No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5140.10833870811359966No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5050.1064417268431281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)