FastQCFastQC Report
Sun 21 May 2023
EGAF00007926247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516023
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21430.4152915664611848No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21430.4152915664611848No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20920.4054082860647685No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18710.3625807376802972No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15760.3054127432304374No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13240.2565777106834385No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12650.2451441117934666No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG12150.23545462120874455No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11360.22014522608488382No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA11280.2185949075913283No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10480.2030917226557731No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9330.1808058943109125No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9080.17596114901855148No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8970.17382946108991268No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8890.17227914259635715No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8880.1720853527846627No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8870.17189156297296826No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8740.16937229542094054No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8050.15600079841402417No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7580.1468926772643855No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7280.1410789829135523No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7200.13952866441999678No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6770.13119570251713586No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6670.12925780440019147No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6520.12635095722477485No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6500.12596337760138598No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6340.12286274061427493No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5940.11511114814649734No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5890.11414219908802514No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5870.11375461946463628No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5830.11297946021785851No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5740.11123535191260854No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5530.10716576586702531No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5510.10677818624363644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)