FastQCFastQC Report
Sun 21 May 2023
EGAF00007926248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516023
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46540.9018977836259237No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30080.5829197535768754No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21760.4216866302471014No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17020.32983025950393685No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14800.28680892130777114No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13800.2674299401383272No Hit
TCCTACACCAACGGCAAACTGACTATCACCC12380.2399117868777167No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12090.23429188233857795No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11760.22789681855266142No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11750.22770302874096696No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11370.22033901589657823No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG11230.2176259585328561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10200.19766560792832877No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9700.18797611734360678No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9450.18313137205124577No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9330.1808058943109125No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9150.17731767770041257No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG9030.1749921999600793No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8900.1724729324080516No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8850.1715039833495794No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7810.15134984293335763No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7480.1449547791474411No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7420.14379204027727446No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA7100.1375907663030524No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6760.13100191270544143No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6760.13100191270544143No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6740.13061433308205256No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6700.1298391738352748No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6620.12828885534171924No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6440.12480063873121934No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6260.12131242212071941No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6060.11743662588683061No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6040.11704904626344174No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5950.1153049379581918No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5420.10503407793838646No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG5280.10232102057466431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)