FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491128
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20590.4192389763971917No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20550.41842452476747405No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19920.4055969115994201No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18500.37668387874444137No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15920.324151748627649No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG12000.24433548891531331No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11810.2404668436741542No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA11790.24005961785929533No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11500.23415484354384195No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10760.21908748839406428No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9600.19546839113225067No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9260.1885455522796501No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8890.1810118747047613No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8790.178975745630467No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8710.17734684237103157No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8270.16838787444413678No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8220.16736980990698963No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7990.1626867130361128No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7870.16024335814695964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7130.145176002997182No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6650.13540258344056946No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT6630.1349953576257106No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6590.1341809059959929No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6550.13336645436627517No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6390.13010864784740436No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6350.12929419621768662No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6340.12909058331025722No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6210.12644361551367464No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6140.12501832516166864No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6030.12277858317994496No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5950.12114967992050951No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5680.11565213141991497No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5140.10465703441872587No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5040.10262090534443159No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5020.10221367952957273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)