FastQCFastQC Report
Sun 21 May 2023
EGAF00007926250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491128
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45830.9331579547490674No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43360.8828655666139988No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27580.5615643986903618No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20390.4151667182486032No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16730.34064439412943265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13240.26958348943656235No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12610.25675587626850843No Hit
TCCTACACCAACGGCAAACTGACTATCACCC11960.2435210372855956No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG11650.23720903715528335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11460.23334039191412423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10470.21318271407861086No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10470.21318271407861086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10460.21297910117118146No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9060.18447329413106156No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8840.17999381016761415No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8780.17877213272303757No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8680.1767360036487433No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG8460.1722565196852959No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8460.1722565196852959No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7960.1620758743138245No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.15067355149777653No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7050.14354709973774657No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6940.14130735775602288No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6610.13458813181085175No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6600.13438451890342232No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6560.13357006727370463No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA6470.13173755110683977No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6460.13153393819941034No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6380.1299050349399749No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6220.12664722842110407No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6210.12644361551367464No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6180.12583277679138635No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5710.11626297014220326No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5530.11259793780847356No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4950.10078838917756675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)