FastQCFastQC Report
Sun 21 May 2023
EGAF00007926262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504571
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16480.32661409395308094No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12830.25427541416371535No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11200.2219707434632589No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10800.21404321691099962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10470.20750300750538575No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7990.15835234288137845No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA7590.1504248163291192No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7420.14705561754440902No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6870.13615526853505255No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6850.13575889220743959No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6170.12228209706859887No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6070.12030021543053405No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5790.11475094684395258No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5460.1082107374383387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)