FastQCFastQC Report
Wed 31 May 2023
EGAF00007926264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480601
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41560.8647505935276871No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14960.31127692202055346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12270.25530533644332826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10380.21597957557308456No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10280.21389884748471183No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7430.1545980969660904No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7230.15043664078934502No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7170.1491882039363214No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA7070.1471074758479487No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6540.1360796169795735No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6030.12546790372887281No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5600.11652077294887027No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5540.11527233609584665No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5130.10674135093351866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)