FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479610
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26610.5548257959592169No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25340.528345947749213No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25130.5239673901711808No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18560.3869810888013177No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14230.296699401597131No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14180.29565688788807576No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT13670.2850232480557119No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13210.2754321219324034No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12100.2522883175913763No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT10910.2274764913158608No Hit
GGTTGCGGTCGGCGCTGCAGAGGCGCCAGTGCCAGCGGTGCTGG10810.22539146389775025No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10700.22309793373782866No Hit
CAGAACGTTCAGGGTGCCGGTAGCTGCCGCCGTTTTAATGGTCA10100.21058776922916536No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA10080.21017076374554325No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA10070.20996226100373222No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC9950.20746022810199954No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8560.17847834699026294No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT8230.1715977565104981No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG7900.1647171660307333No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7570.1578365755509685No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7530.15700256458372427No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT7360.15345801797293634No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7310.1524155042638811No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7300.15220700152207No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC6870.14324138362419467No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6840.1426158753987615No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT6580.13719480411167406No Hit
ACCGTGGTCGCCGTTGTCGCCATCGTCACCATCGTCGCCGTCAT6360.13260774379183085No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.13073121911553137No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6240.1301057108900982No Hit
CAGGTTGCCGTTTACGTAGTGATACAGAGCCACACCTTTTTTCG6040.1259356560538771No Hit
GCCGCTGGTAGCCGGTTTGACTTCGTGCAGAATAGACACCTTCG6040.1259356560538771No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5930.1236421258939555No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5820.12134859573403389No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5410.11279998331978065No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5380.1121744750943475No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5370.11196597235253644No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5320.11092345864348117No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC4870.1015408352619837No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4860.10133233252017264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)