FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511913
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28790.5624002516052533No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC26440.5164940136312225No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25940.5067267289558969No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19160.37428234875848043No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15250.29790218259743356No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15030.2936045773402902No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT14900.2910650833247056No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG14240.2781722675532756No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12500.24418211688314226No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12280.23988451162599897No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT11350.22171736212989318No Hit
GGTTGCGGTCGGCGCTGCAGAGGCGCCAGTGCCAGCGGTGCTGG11250.21976390519482802No Hit
CAGAACGTTCAGGGTGCCGGTAGCTGCCGCCGTTTTAATGGTCA10690.20882454635846323No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA10550.20608970664937207No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA10530.20569901526235904No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC10220.19964329876365708No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8970.1752250870753429No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8520.16643453086754975No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT8420.16448107393248462No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT8280.16174623422339343No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8200.1601834686753413No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG7810.15256498662858728No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7580.14807203567793745No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7570.14787668998443096No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC7360.14377443042079416No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT7350.14357908472728764No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6940.13556991129352058No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6910.13498387421300104No Hit
ACCGTGGTCGCCGTTGTCGCCATCGTCACCATCGTCGCCGTCAT6640.12970954048832514No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6580.12853746632728608No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6530.1275607378597535No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6500.12697470077923398No Hit
CAGGTTGCCGTTTACGTAGTGATACAGAGCCACACCTTTTTTCG6400.12502124384416882No Hit
GCCGCTGGTAGCCGGTTTGACTTCGTGCAGAATAGACACCTTCG6270.12248174982858416No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5920.11564465055585618No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5820.11369119362079103No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5670.11076100821819333No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5430.106072711574037No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5420.10587736588053048No Hit
TGCACCCAGTTTGCCCTTGTTCGGGGTGCCATCCAGCTCAATCA5390.10529132880001094No Hit
ATAACCGCCAGTCATACGGTCCAGTTCGATGAAACCGGACGGGA5350.10450994602598487No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG5240.10236114339741323No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5200.10157976062338718No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG5130.10021234076884157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)