FastQCFastQC Report
Sun 21 May 2023
EGAF00007926274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462174
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14060.3042144300631364No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12410.26851359011973847No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11740.2540168854154496No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11470.2481749297883481No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10640.2302163254531843No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10200.22069610146827817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9910.21442140838731732No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9210.19927559750223942No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8580.1856443677056693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8430.18239883680172403No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA8310.1798024120785678No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7830.16941671318594295No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7680.16617118228199768No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7510.16249291392419304No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.15383816484700566No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7000.15145810885077915No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6490.14042330377736525No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6460.1397741975965762No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5860.12679207398079512No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5730.12397928053070921No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5710.12354654307684984No Hit
GTTCTGGTTAACGAAGGTAACGGTTATGTGG5280.11424268781887342No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5040.10904983837256098No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5030.1088334696456313No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5030.1088334696456313No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4940.10688615110326415No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4800.10385698892624855No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4760.10299151401852982No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4760.10299151401852982No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4760.10299151401852982No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4650.10061145802230329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)