FastQCFastQC Report
Wed 31 May 2023
EGAF00007926276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463629
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13790.2974360965340822No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12800.27608281621727715No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11640.2510628109975864No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11480.24761177579487045No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11030.2379057392872318No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10550.2275526336790839No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9480.2044738357609209No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA9270.19994435205735622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8860.19110107435039655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8800.18980693614937805No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8230.17751262323970243No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7800.16823796613240327No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7630.16457124122951755No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7470.1611202060268016No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7370.15896330902510414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6960.15012003131814447No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6620.14278658151237303No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6150.13264916560439488No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5590.12057054239488901No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5520.11906071449370079No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5170.11151157498775961No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5170.11151157498775961No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5160.11129588528758987No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5120.11043312648691087No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5110.11021743678674113No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5000.10784485008487389No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4950.10676640158402514No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG4810.10374674578164868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)