FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438761
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38000.8660751525317885No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12630.2878560309599076No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11760.2680274682572061No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11250.2564038280521742No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10710.24409644430566985No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10260.23384029118358285No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10150.23133323153151716No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9240.21059301077351908No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8260.1882573884187519No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA8200.18688990133580696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7930.18073620946255478No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7040.16045181773220502No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6910.157488929052491No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6800.15498186940042527No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6520.14860026301334897No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6310.1438140582230417No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6220.14176282759862432No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5960.1358370502391963No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5340.12170635038209869No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5110.11646431656414313No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5000.1139572569120774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4940.1125897698291325No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4920.11213394080148419No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4820.10985479566324263No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4640.10575233441440783No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4530.10324527476234215No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4440.10119404413792474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)