FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511091
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC63541.2432228311592262No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG54111.0587155711996494No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44470.8700994539132954No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA35580.6961578270797176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT33310.6517430359759808No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG28940.5662396716044696No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC28230.5523478206425079No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG28210.5519565008971005No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA24070.47095331359777415No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG22710.44434357091007276No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20260.3964069020976695No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG18900.3697971594099681No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC15810.30933825874452886No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC15560.3044467619269367No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT15250.2983813058731224No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15120.29583772752797444No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14620.2860547338927901No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14330.2803805975843832No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10550.2064211657023896No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC9910.19389893384935364No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT8840.17296332747005913No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG8130.1590714765080974No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7910.15476695930861625No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7800.15261470070887573No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7720.15104942172724622No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.14909282300020937No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7600.14870150325480197No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7490.14654924465506142No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6870.13441833254743282No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6610.129331175857137No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6600.1291355159844333No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6410.12541797840306326No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6380.1248309987849522No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6370.12463533891224851No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6130.11993950196736003No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6100.11935252234924897No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5830.1140697057862494No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5630.11015650833217568No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5510.10780858985973144No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5180.10135181406050978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)