FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13040.26477049839391514No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10180.20669966822469757No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9630.1955322008844634No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9090.1845677784049608No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7140.14497403056231245No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5840.11857819866721354No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5240.10639550702332173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)