FastQCFastQC Report
Sun 21 May 2023
EGAF00007926288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15420.31144090903582583No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11110.2243909532677059No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9650.19490303321632418No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9540.19268134060971323No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9450.1908635921133952No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8920.18015907319063335No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8620.17409991153623985No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7640.15430665013188774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6770.1367350813341466No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6690.13511930489297502No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6250.1262325344665312No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5570.11249843471657262No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5540.11189251855113326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5350.10805504950335072No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4980.10058208346293207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)