FastQCFastQC Report
Wed 31 May 2023
EGAF00007926291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428461
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC37720.8803601728045259No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT36230.845584545617921No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC27170.6341300608456779No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26930.628528617540453No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG20090.46888748334154107No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17480.40797178739721934No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC17040.3977024746709736No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14740.34402197632923415No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13950.325583892116202No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13540.3160147598031093No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12840.2996772168295364No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11340.26466819617188025No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10660.24879744014040953No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9990.2331600775799898No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9310.217289321548519No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9220.21518878030905966No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG8770.2046860741117628No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT8740.20398589369860967No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8560.19978481121969094No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8520.1988512373354868No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8500.1983844503933847No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7950.18554780948557745No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7780.18158012047770974No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7530.17574528370143375No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC7410.17294456204882125No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6880.16057470808311608No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5890.13746875444906304No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5820.13583500015170577No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5690.13280088502804224No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5570.13000016337542974No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5500.12836640907807245No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT5160.12043103106233706No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5110.11926406370708187No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4720.11016171833609127No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4720.11016171833609127No Hit
GCCACGGCCGTCGGTAACAGCAGTCAGGGAGCCGCATGCATCAT4640.10829457056768294No Hit
CGGGGCGACTTCACGTTGAGCAGTCTGTACGTTGCCACGCAGTT4590.10712760321242773No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4530.1057272423861215No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4490.10479366850191733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)