FastQCFastQC Report
Wed 31 May 2023
EGAF00007926293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432246
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC38230.8844500585314843No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT37360.8643226310943306No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC28220.6528689681338867No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27440.6348236883626454No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG20250.46848322483030497No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17930.41481008499789473No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC17660.4085636420001574No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15440.3572039995743165No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14090.3259717845856295No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13710.31718049444066576No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12610.2917320229684022No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11140.25772361109183195No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10250.23713348417336425No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT9440.21839415518015204No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9350.2163120075142396No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9240.21376716036701324No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9010.2084461163319036No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8770.20289372255613702No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8750.20243102307482314No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8620.19942347644628292No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG8300.1920202847452608No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7510.17374365523336247No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC7350.17004205938285144No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7190.1663404635323404No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7050.1631015671631432No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6650.1538475775368656No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5990.1385784946535075No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5930.13719039620956583No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5880.13603364750628116No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5590.12932450502722986No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5300.12261536254817858No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5200.12030186514160918No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4920.11382407240321482No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4870.11266732369993014No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT4650.10757762940547744No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4550.10526413199890804No Hit
CGGGGCGACTTCACGTTGAGCAGTCTGTACGTTGCCACGCAGTT4480.10364468381430945No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4450.10295063459233862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)