FastQCFastQC Report
Wed 31 May 2023
EGAF00007926295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439772
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34140.7763113613417862No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30450.6924042458364789No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15970.3631427194091484No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT12900.2933338184331881No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG12680.2883312261808392No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10290.23398488307577564No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC9790.222615355229528No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9020.2051062823463067No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8930.20305976733398218No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC8290.18850677169078522No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7710.17531811938913802No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6830.15530775037974223No Hit
CCAATCGCATTCTGCCAGCAGGCGGTTACGACGCTGGCGCAGGT6620.15053254868431823No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6610.15030515812739328No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6540.14871342422891864No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6480.1473490808873689No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5810.1321139135733971No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5720.13006739856107258No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5560.12642914965027333No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5260.11960743294252477No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA5170.11756091793020021No Hit
GACCACGCGTTCGGATGCCTGGATGTTACGTACGATATCCTCCA5160.11733352737327524No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5120.11642396514557544No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT4950.11255832567785123No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4840.11005702955167676No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4840.11005702955167676No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4790.10892007676705202No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4790.10892007676705202No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4620.10505443729932783No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT4540.10323531284392821No Hit
GTACTCCAGTCGGTGTTTCCGCCCTCTACGCGGCGAAGCGACCG4400.10005184504697888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)