FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439772
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT77481.7618220350545284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15940.36246054773837355No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13290.30220205015326124No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC12720.28924078840853895No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11470.26081696879292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10910.24808309760512268No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10560.24012442811274937No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC10500.23876008477119962No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10440.2373957414296499No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9670.21988666854642858No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG8860.20146803343550748No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8730.19851195619548312No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8340.18964372447540997No Hit
ATGGCCCGTCACCACAACATTAACGGTAACA7180.16326641987211554No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7060.16053773318901612No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6750.1534886259243426No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.1530338448104927No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6520.1482586431150687No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6070.1380260680534459No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5890.13393303802879675No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.13256869468724702No Hit
AGCGATGACAAACTGGAACGTAACTGCTACT5660.12870305521952283No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT5400.1227909007394741No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5390.12256351018254914No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5350.12165394795484934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4970.11301310679170115No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4880.11096659177937658No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4720.10732834286857734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)