FastQCFastQC Report
Sun 21 May 2023
EGAF00007926297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446071
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34310.7691600664468212No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30300.6792640633441762No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15550.34859921402646665No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT13630.30555673872544953No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG13480.30219404534255756No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10510.23561271636129674No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC9630.21588491518166392No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9530.21364311959306925No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9070.20333085988553393No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC8430.1889833681185282No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7500.16813466914459807No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7490.1679104895857386No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7140.16006420502565735No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6950.15580479340732753No Hit
CCAATCGCATTCTGCCAGCAGGCGGTTACGACGCTGGCGCAGGT6910.15490807517188968No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6770.15176956134785718No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6090.13652535134541363No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5720.12823070766761346No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5620.1259889120790188No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5450.12217785957840792No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5380.12060860266639169No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5310.11903934575437543No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA5180.1161250114892024No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5130.11500411369490507No Hit
GACCACGCGTTCGGATGCCTGGATGTTACGTACGATATCCTCCA5100.11433157501832669No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT4970.11141724075315364No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4870.109175445164559No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4750.10648529045824544No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4700.10536439266394812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)