FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439123
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT18740.42675970058502977No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10370.23615251307720161No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10360.23592478644935475No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7490.17056724425730377No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT7150.16282453891051027No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7110.1619136323991228No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6800.1548541069358699No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5640.1284378181056333No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4980.11340786066774002No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4790.10908105473864953No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4790.10908105473864953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)