FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439123
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19060.43404695267612947No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13310.30310414166418065No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10080.22954844086964243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8630.19652807983184667No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8370.1906071875078281No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7550.17193360402438496No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7460.16988406437376316No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7460.16988406437376316No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6540.14893321461185136No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.14802230810046388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5340.12160601927022725No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5130.11682376008544304No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4780.10885332811080267No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4440.10111062276400917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)