FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410995
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38690.9413739826518571No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17140.41703670360953293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11560.28126862857212376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9660.2350393557099235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7280.17713110865095683No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7230.17591454883879365No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.1732381172520347No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6610.16082920716797042No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6220.15134004063309775No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5880.1430674339103882No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5230.12725215635226705No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4610.11216681468144381No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4160.10121777637197532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)