FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417816
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT18160.43464108602829954No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10120.2422118827426427No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9820.2350316885901928No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7500.17950485381124706No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT7080.16945258199781724No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6520.1560495529132441No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6310.1510234170065292No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5160.12349933942213798No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4600.11009631033756487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4530.10842093170199323No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4190.10028337832921669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)