FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417816
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36790.8805311428954372No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18140.4341624064181362No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12500.2991747563520784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.23838244586133608No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7900.18907844601451357No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7410.1773507955655121No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7360.17615409654010378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6860.16418710628602065No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.15341681505734583No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.14719398012522258No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.12134528117640302No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4580.10961763072740154No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4230.10124073754954335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)