FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409158
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13210.32285816237248205No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6790.16595056188562854No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5860.14322095620762637No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.13979929513781963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5630.13759965587865813No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4980.12171337234026952No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4240.10362744954271944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)