FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411049
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT35690.8682663137484826No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19450.47317959659310693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12180.29631503786653174No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11780.28658383793659636No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA9660.23500847830793897No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8510.20703127850937478No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7760.18878527864074598No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7510.1827032786845364No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7280.17710783872482355No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6070.1476709589367691No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5470.13307415904186604No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5460.13283087904361765No Hit
TCCGAAGCGGATCTGAACAAAGCGAGCCTGG5130.12480263910142099No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5020.12212655912068877No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5010.12188327912244039No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4520.10996255920826957No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4480.10898943921527604No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4460.10850287921877926No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4320.1050969592433019No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG4150.10096119927307937No Hit

[OK]Adapter Content

Adapter graph