FastQCFastQC Report
Wed 31 May 2023
EGAF00007926309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376350
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT33920.901288694034808No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11410.3031752358177229No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG9770.25959877773349277No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7060.1875913378504052No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6650.17669722332934767No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6280.16686594924936893No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6270.16660023913909924No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG6160.1636774279261326No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5200.1381692573402418No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4500.11956954962136308No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4500.11956954962136308No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT4380.11638102829812674No Hit
GTCTGCACCGTTTGCACCGGTAGCGTGATAATTCCACGCAAAGT4380.11638102829812674No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4100.10894114521057525No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4100.10894114521057525No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4010.106549754218148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)