FastQCFastQC Report
Sun 21 May 2023
EGAF00007926310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376350
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53741.427926132589345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT33090.8792347548824233No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11310.3005181347150259No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG10760.28590407865019263No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA8130.21602231964926266No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7420.19715690182011428No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.19396838049687792No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6520.17324299189584164No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6310.16766307958017804No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6120.1626145874850538No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5040.13391789557592665No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA4990.1325893450245782No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4890.1299322439218812No Hit
TCCGAAGCGGATCTGAACAAAGCGAGCCTGG4340.11531818785704796No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4190.11133253620300251No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4190.11133253620300251No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA3980.10575262388733891No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3840.10203268234356318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)