FastQCFastQC Report
Wed 31 May 2023
EGAF00007926311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390197
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT35020.8974953677245083No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10930.2801149163115042No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG10750.2755018618800247No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7480.19169803970814742No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6940.17785887641370898No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG6290.16120062430003307No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6220.15940665868779103No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5850.1499242690230832No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4500.11532636078698709No Hit
GTCTGCACCGTTTGCACCGGTAGCGTGATAATTCCACGCAAAGT4490.11507007998523822No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4460.11430123757999165No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4230.10840677913976787No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4210.10789421753627014No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4150.10635653272577697No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4140.10610025192402811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)