FastQCFastQC Report
Wed 31 May 2023
EGAF00007926312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390197
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49411.2662834414411182No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT34380.8810933964125813No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11580.2967731684251801No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11080.28395912833773707No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA8150.20886885342532108No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7890.20220555257985068No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7020.17990912282769986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6610.1694016099559966No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6380.1635071515157728No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6350.16273830911052622No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4630.11865801120972226No Hit
TCCGAAGCGGATCTGAACAAAGCGAGCCTGG4490.11507007998523822No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4380.11225099116600078No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA4290.10994446395026101No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4220.108150498338019No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4170.1068690943292747No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4150.10635653272577697No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4010.10276860150129294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)