FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences350804
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22600.6442343872931894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16200.46179633071458703No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14200.4047844380337739No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13680.3899613459367624No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13060.3722876592057103No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12790.3645910536938005No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9990.284774403940662No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT8100.23089816535729352No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7390.21065894345560485No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6920.1972611486756137No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5060.14424008848245745No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4840.13796878028756798No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4790.13654348297054766No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4620.13169747209267854No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG4310.12286062872715249No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4090.11658932053226304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4080.11630426106885898No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG3870.11031801233737358No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA3840.10946283394716139No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG3820.10889271502035325No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT3690.10518694199610039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)