FastQCFastQC Report
Wed 31 May 2023
EGAF00007926316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences350804
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45571.299015974732329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34000.9692021755738247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22570.6433792089029772No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15790.4501088927150203No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13850.3948073568146315No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13060.3722876592057103No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11050.314990707061493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7790.2220613219917675No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG7660.2183555489675146No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6940.19783126760242187No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6090.17360121321307623No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5390.15364705077479163No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5340.1522217534577713No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5180.14766080204330623No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA4470.12742158014161753No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4190.1194399151663037No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4170.11886979623949556No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4100.11687437999566709No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4090.11658932053226304No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3780.10775247716673698No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG3760.10718235823992885No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC3680.1049018825326963No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC3680.1049018825326963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)