FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400840
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG57061.423510627681868No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG42171.052040714499551No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG37280.9300469015068357No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG36000.8981139606825667No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25990.6483883843927751No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20310.5066859594850813No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17880.44606326713900807No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG17220.42959784452649435No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16670.4158766590160663No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG15770.3934238099990021No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12440.3103482686358647No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12330.3076040315337791No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG10850.27068156870571797No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT9420.23500648637860494No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT8350.20831254365831753No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7080.1766290789342381No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6660.16615108272627482No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6530.16290789342381No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA6290.15692046701925955No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6010.14993513621395071No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5610.13995609220636662No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5520.1377108073046602No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5370.13396866580181618No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5260.13122442869973056No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA5080.12673385889631772No Hit
TTCTTCGTCAGAGTCCTTCAGGTGACGGTAACCGTTTTTGCGGT5070.12648438279612811No Hit
ACCGACATTTAAATCCGCGGCTCACATAGTGTCGCCCGGTACTA5050.12598543059574893No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4810.11999800419119848No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4670.11650533878854406No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4630.11550743438778566No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4580.11426005388683765No Hit
CAGTTTGCGGCTCGGAGTGTTCTGCATCAGTTCACGGAAACCCT4550.11351162558626883No Hit
GACTAAATTTAAATCCCTGTTTCACATGGTATCGCCCGGAACTA4450.11101686458437282No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT4450.11101686458437282No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT4390.1095200079832352No Hit
AGTGATAACGTAACGGGTTTCGATCATGTCTTCCGGCTGCACGG4340.10827262748228719No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG4300.10727472308152879No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4270.10652629478095998No Hit
ATGCAGCTGATCATCGACAGTAATACCCTTCGGCATCGGGTCGT4180.10428100987925357No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4130.10303362937830556No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4070.10153677277716794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)