FastQCFastQC Report
Sun 21 May 2023
EGAF00007926323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403503
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30760.7623239480251696No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27480.681035828729898No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG16340.40495361868437163No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13660.3385352773089667No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13290.3293655809250489No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12970.32143503270111995No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10900.27013429887757956No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10260.25427320242972173No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8040.19925502412621465No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7990.19801587596622577No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7850.19454626111825685No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7750.19206796479827906No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7320.18141129062237454No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT6560.16257623859054332No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5960.14770646067067655No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5710.14151071987073208No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5670.14051940134274093No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5650.14002374207874538No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4990.12366698636689195No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4910.12168434931090971No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4820.11945388262292969No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG4740.11747124556694746No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4620.11449728998297411No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4410.10929286771102073No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4270.10582325286305182No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG4230.1048319343350607No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4220.10458410470306292No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4210.10433627507106516No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4190.10384061580706958No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG4180.10359278617507181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)