FastQCFastQC Report
Sun 21 May 2023
EGAF00007926324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403503
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT66051.6369147193453333No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19420.48128514533968775No Hit
ATGTCCAACATGGACATCGATGGTATTAACA16400.4064405964763583No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14770.36604436646072025No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13140.32564813644508217No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13080.3241611586530955No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10610.262947239549644No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10580.26220375065365065No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9950.24659048383779053No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8560.2121421649900992No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8440.20916820940612585No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8060.19975068339021024No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7940.19677672780623687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6440.15960228300656998No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG6320.1566283274225966No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5940.147210801406681No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5900.14621948287868988No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5800.1437411865587121No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.1434933569267143No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5370.13308451238280755No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA5300.13134970495882312No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5160.12788009011085422No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4770.11821473446294081No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4770.11821473446294081No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4520.1120189936629963No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG4480.1110276751350052No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4460.11053201587100964No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4370.10830154918302962No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4310.10681457139104295No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4190.10384061580706958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)