FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences363082
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55331.5238981827796476No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33750.9295420869114966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16530.4552690576784308No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12580.3464782060250853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12440.34262232773863754No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11480.3161820194887105No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9290.25586506629356454No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9250.2547633867831509No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7080.19499727334321174No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6760.1861838372599027No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.18398047823907546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5910.16277314766361317No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5180.1426674965985645No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5080.13991329782253045No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4850.1335786406376521No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4780.13165070149442826No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4730.13027360210641123No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4620.12724398345277374No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4530.12476520455434309No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA4400.12118474614549882No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4300.11843054736946473No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4280.11787970761425794No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4220.1162271883486375No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4220.1162271883486375No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4180.11512550883822387No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4060.111820470306983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)