FastQCFastQC Report
Sun 21 May 2023
EGAF00007926329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404882
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18970.46853157216176566No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15710.3880142856437184No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13290.328243784608849No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11790.2911959533888886No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10700.2642745293690507No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10480.25884084745678987No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9020.22278095840269513No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8490.20969072470497577No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7920.19561254884139082No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6900.17042002361181777No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6520.16103457303609447No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6120.15115515137743835No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6110.15090816583597197No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5930.1464624260895767No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5800.14325161405051348No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5470.13510109118212218No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5450.1346071200991894No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5360.13238425022599176No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5320.13139630806012617No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5100.1259626261478653No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4820.11904703098680604No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC4750.11731813219654122No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4660.1150952623233436No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4530.11188445028428036No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4420.10916760932814992No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4370.10793268162081791No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4360.10768569607935152No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4350.1074387105378851No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4160.10274598525002346No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG4140.10225201416709066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)