FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410124
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC37520.9148452663097014No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32050.7814709697554887No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA30140.7348996888745842No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA25190.6142044844973715No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG24980.6090840818874291No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21420.5222810662141206No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG19310.4708332114189855No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18550.4523022305449083No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG18510.4513269157620622No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17540.4276755322780428No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG17490.426456388799485No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16780.4091445514039656No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG16140.393539514878427No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG14790.36062264095736896No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14650.3572090392174074No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT14440.35208863660746503No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13310.32453599399206096No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13270.3235606792092148No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG12720.31015010094508005No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12700.30966244355365696No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12320.3003969531166184No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11850.288937004418176No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11430.27869619919829125No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA11320.2760140835454643No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11020.26869922267411805No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG10970.2674800791955604No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10220.2491929270171948No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9580.23358789049165618No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8910.21725136787898294No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8640.21066799309477133No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG8530.20798587744194438No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8500.20725439135480975No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8330.20310930352771356No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8260.2014025026577328No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT7370.17970174873940564No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7190.1753128322165979No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6940.16921711482380938No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6880.16775414264954014No Hit
GATTGCCGGGGATGGAGTTTCCGGGCGCGCCGGGGACTCCCAGG6850.1670226565624055No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6820.1662911704752709No Hit
GAAAACCAGGATACGGTCCGCTTTCGGCGCTTCTTTCGCAGCTG6350.15483122177682848No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG6290.15336824960255924No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6170.15044230525402075No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6160.1501984765583092No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6070.14800401829690532No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG6000.14629721742692453No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5990.14605338873121299No Hit
ATCGCTAGTCACAGTGATTTTCAGTTTACGGCCTGCGGAGGTGG5970.14556573133978992No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5920.14434658786123222No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5910.14410275916552068No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5890.1436151017740976No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG5860.14288361568696298No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5860.14288361568696298No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5690.13873852785986676No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5590.13630024090275136No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5580.13605641220703982No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5460.13313046785850133No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5440.13264281046707824No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA4910.11971988959436658No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4640.11313651481015498No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4630.11289268611444343No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4440.10825994089592415No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4380.10679696872165491No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4310.10509016785167412No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4300.10484633915596257No Hit
GATCAGCGGGTTGAATGCCTGTTTAACTTTCTTCGGGTGTTTCT4170.10167656611171257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)