FastQCFastQC Report
Wed 31 May 2023
EGAF00007926344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422745
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29770.7042070278773256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28590.6762942199198099No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20650.4884741392565258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20340.4811411134371784No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT19010.44968006717997844No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17740.41963831624265213No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13740.32501862825107336No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13220.31271806881216807No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12070.28551490851458916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11800.2791280795751576No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11410.2699026599959786No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11090.26233308495665236No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11020.2606772404167997No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10700.2531076653774734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10660.25216146849755766No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10160.24033400749861028No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9380.2218831683402524No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9040.2138404948609682No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8180.19349726194277875No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8050.19042212208305243No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7980.1887662775431998No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7290.17244438136465245No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7160.16936924150492613No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA7050.16676720008515772No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6740.15943417426581036No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6740.15943417426581036No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6260.1480798117068209No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6210.14689706560692617No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5800.13719854758778932No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5700.13483305538799986No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5690.1345965061680209No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5680.13435995694804195No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5620.13294066162816828No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5530.13081171864835775No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5410.12797312800861038No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5260.12442488970892619No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5180.1225324959490946No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4920.116382216229642No Hit
CGCGATAACAACATTGAACGTGACAACAATA4810.11378017480987357No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG4750.11236087948999988No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4700.11117813339010514No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4560.10786644431039988No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4230.10006032005109462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)