FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389234
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57741.4834264221522273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27180.6982945991357384No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25670.6595004547393085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18790.4827430286151775No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT16420.4218542059532312No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16280.41825739786349597No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12780.32833719562011543No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12380.31806060107801476No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10790.27721113777316475No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10600.2723297553656669No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10440.26821911754882666No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10220.26256699055067134No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10100.2594840121880411No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9790.25151965141791316No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9540.24509677982910025No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9340.2399584825580499No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8740.22454359074489896No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8470.21760688942898104No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7640.19628295575412222No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7400.1901169990288618No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6940.1782989153054461No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6810.1749590220792634No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6270.16108561944742752No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5980.15363508840440457No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5890.1513228546324319No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5860.15055211004177435No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5790.14875370599690674No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5670.14567072763427655No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5490.14104626009033128No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5360.13770636686414855No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5300.13616487768283345No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4950.1271728574584954No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4920.12640211286783787No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4820.1238329642323127No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4760.1222914750509976No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4640.11920849668836742No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4610.11843775209770986No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4530.11638243318928974No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4450.1143271142808696No Hit
CGCGATAACAACATTGAACGTGACAACAATA4330.11124413591823941No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4260.10944573187337181No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3980.10225211569390136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)