FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404394
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33920.8387859364876827No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28010.692641334935731No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26800.6627200205739947No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22780.5633120174878954No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT20900.5168227026118093No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20840.5153390010732107No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16340.40406138567832367No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15200.3758710564449522No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15030.3716672354189231No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14830.3667215636235948No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14720.36400144413616425No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13800.341251353877654No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12420.3071262184898886No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11650.28808538207787454No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10310.2549493810491748No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10050.24852000771524801No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9340.23096287284183245No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8730.2158785738660811No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8470.2094492005321543No Hit
CGCGCCGAAGTTAGATTTATTTTCGGTACCGTCCAGATCGATCA8410.2079654989935558No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8080.19980514053126405No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7530.1862045430941112No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7070.17482949796485606No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6850.1693892589899949No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6680.16518543796396584No Hit
AACGTGACCTTCCTCATCTTTACGCCAGTGCTGCGCCTCATCGA6510.16098161693793675No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6300.15578866155284202No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6120.15133755693704654No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5860.14490818360311972No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5860.14490818360311972No Hit
ACCCAGGTCAGTACCGTTGGTGGTGCCGGTCAGCGCAGTGGTGC5850.1446609000133533No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5800.1434244820645212No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5510.13625325796129517No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5430.13427498924316383No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5040.12463092924227363No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4670.11548143642091623No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG4510.11152489898465358No Hit
CGGTTCATGGATCGGGCTGACGTTAGGGGTAGCAGTGTGGGAGT4350.10756836154839093No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4290.10608466000979243No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG4250.10509552565072676No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4250.10509552565072676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)