FastQCFastQC Report
Sun 21 May 2023
EGAF00007926348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404394
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72351.7890967719600193No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59461.470348224751109No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA52341.294282308837421No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26160.646893870828944No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23380.5781490328738804No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20620.5098987620983496No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18430.45574365593950455No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16790.41518914721781236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16610.41073804260201685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15000.3709253846496239No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14460.3575720708022374No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14410.35633565285340535No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14310.3538628169557412No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10780.2665717097681964No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9900.24481075386875176No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8950.22131881284094224No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8910.2203296784818766No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8840.21859869335351167No Hit
TCCCGTGAGGCACTGGAACTGCGCGACGGTG8640.21365302155818333No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8540.21118018566051922No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7730.1911502148894395No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7150.1768077666829874No Hit
AACGATGGCTCCGTAGAATGGCAGTACCAGG7090.1753240651443889No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6600.1632071692458345No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6290.1555413779630756No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.1520794077063458No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5910.1461446015519518No Hit
CCGACTGGTACGATCCCGGATATGCGTGGCC5880.14540275078265258No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5240.12957660103760194No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5120.12660919796040496No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC4910.12141624257531022No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC4800.11869612308787963No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG4580.11325588411301848No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG4500.11127761539488716No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4490.11103033180512076No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4340.10732107795862451No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4300.10633194359955885No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4200.10385910770189469No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG4200.10385910770189469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)